SONGS
Statistics on Next Generation
Sequencing
Spring 2013
Week |
Dates |
Presenters |
Readings |
3 |
28Jan |
Organization |
|
4 |
4Feb |
August Woerner Joe Watkins |
Subsampling Methods for Genomic
Inference 2010 Peter J. Bickel,
Nathan Boley, James Brown, Haiyan
Huang, and Nancy Zhang Annals of Applied
Statistics 4 1660-1697 |
5 |
11Feb |
Joe Watkins |
|
6 |
18Feb |
Joe Watkins |
|
7 |
25Feb |
Emily Sessa
Sara Ziebell Michael Sohn |
Gene Ontology Analysis for RNA-seq: Accounting for Selection Bias 2010
Matthew D Young, Matthew J
Wakefield, Gordon K Smyth and Alicia Oshlack Genome Biology 11 R14 |
8 |
4Mar |
Emily Sessa
Sara Ziebell Michael Sohn |
|
9 |
11Mar |
Spring Break |
|
10 |
18Mar |
An integrated encyclopedia of DNA elements in the
human genome The ENCODE Project Consortium Nature 487 57-74 On the immortality of television sets: ÒfunctionÓ
in the human genome according to the evolution-free gospel of ENCODE Dan Graur,
Yichen Zheng, Nicholas
Price, Ricardo B. R. Azevedo, Rebecca A. Zufall, and Eran Elhaik Genome Biology and
Evolution
Advance Access |
|
11 |
25Mar |
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12 |
1Apr |
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13 |
8Apr |
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14 |
15Apr |
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15 |
22Apr |
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16 |
29Apr |
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17 |
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Proposed Papers
Optimal Tests for Rare
Variant Effects in Sequencing Association Studies 2012
Lee, S., Wu, M. C., and Lin, X.
Biostatistics 13 762-775.
Rare-variant Association
Testing for Sequencing Data with the Sequence Kernel Association Test 2011
Wu,
M. C., Lee, S., Cai, T., Li, Y., Boehnke,
M., and Lin, X.
American Journal of
Human Genetics 89 82-93
Comparing Statistical Methods for Constructing Large Scale
Gene Networks 2012
Jeffrey D. Allen, Yang Xie, Min Chen, Luc Girard, Guanghua
Xiao
PLos One e29348